NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0138284_1342609

Scaffold Ga0138284_1342609


Overview

Basic Information
Taxon OID3300012779 Open in IMG/M
Scaffold IDGa0138284_1342609 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Simoncouche, Canada - S_130206_E_mt (Metagenome Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1092
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameCanada: Quebec
CoordinatesLat. (o)48.2311Long. (o)-71.2508Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F017290Metagenome / Metatranscriptome241N
F054664Metagenome / Metatranscriptome139N
F091498Metagenome / Metatranscriptome107N

Sequences

Protein IDFamilyRBSSequence
Ga0138284_13426091F091498N/AQLIMRVLAVIPVGYIVSSVERPTVSQVGASTLLISDIRVSTYYTQTT*
Ga0138284_13426092F017290AGGAGMATTVITGRDVGLSFTGGTDIQAQATNAVLTKVNDRQVYQTMDGEAYKTTNISATFQLDMLADWGKTSSVCEALWAAAESAPDTDISMTLTAASGAQFVFPVKPEFPTAGGSGVDAQTVSFTFTVSKGAVVETFS*
Ga0138284_13426094F054664GGAGGVANETIAYNKNDLRDIYKAFKLMDDQATEEARTQSAALAYFA
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