NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0138271_1027258

Scaffold Ga0138271_1027258


Overview

Basic Information
Taxon OID3300012780 Open in IMG/M
Scaffold IDGa0138271_1027258 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Croche, Canada - C_130625_M_mt (Metagenome Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)667
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Synurophyceae → Synurales → Mallomonadaceae → Synura(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameCanada: Quebec
CoordinatesLat. (o)46.8319Long. (o)-72.5Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F010164Metagenome / Metatranscriptome307Y

Sequences

Protein IDFamilyRBSSequence
Ga0138271_10272581F010164N/AQSLFWLQAWKGLYEKDKIEIVNQKYKQVKTGLSETFATTESLIKNFESKAFISLQRYMIFVTASRILRKFLFLSEAEQSKLIEVTISKLGGFKK*
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