NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0160422_10003740

Scaffold Ga0160422_10003740


Overview

Basic Information
Taxon OID3300012919 Open in IMG/M
Scaffold IDGa0160422_10003740 Open in IMG/M
Source Dataset NameMarine microbial communities from the Central Pacific Ocean - Fk160115 60m metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)9413
Total Scaffold Genes14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (21.43%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Photic Zone → Seawater → Marine Microbial Communities From The Costa Rica Dome And Surrounding Waters

Source Dataset Sampling Location
Location NameThe Central Pacific Ocean
CoordinatesLat. (o)10.0Long. (o)-145.0Alt. (m)Depth (m)60
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F034139Metagenome175Y
F036706Metagenome169Y
F062838Metagenome130N
F099140Metagenome103N

Sequences

Protein IDFamilyRBSSequence
Ga0160422_1000374012F034139N/AMSDMNLEQIYKTLKDFVEKEEDLQCKWPCDSDYNVPTWDKIYDALDILDSIINYEPSDAELESYFNDYQDPPHVRNQKMLEMKSESHGRNHNIPFNY*
Ga0160422_100037402F036706N/AMPYFRSSLGIVFPKNPHINQVYYDVDLKRTFRYEEKPSMAILINSTTDWCHWVDITDKDLV*
Ga0160422_100037403F099140N/AMTTKKLYKIKTKSILYEVFEIEAESYDKALDSIMPTIYDGTDDYPVDVERVGWWFDGMGKSILDKDDEHKGLFGIPITIEEYDKTPEWQIVKPQGCFPGDFREPTEEEWVADEKQAIADGRIVKESVTLKFAHCPEY*
Ga0160422_100037406F062838N/AMILMRQTKVIIYCHKERKNSPIASVRYTKYDDLDRVVDVEQVDYEDTQYFHSEVLQAIQLGIDVLIYTELDGNLLQRKIEHWT*
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