NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0160422_10043454

Scaffold Ga0160422_10043454


Overview

Basic Information
Taxon OID3300012919 Open in IMG/M
Scaffold IDGa0160422_10043454 Open in IMG/M
Source Dataset NameMarine microbial communities from the Central Pacific Ocean - Fk160115 60m metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2606
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (81.82%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Photic Zone → Seawater → Marine Microbial Communities From The Costa Rica Dome And Surrounding Waters

Source Dataset Sampling Location
Location NameThe Central Pacific Ocean
CoordinatesLat. (o)10.0Long. (o)-145.0Alt. (m)Depth (m)60
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004869Metagenome / Metatranscriptome420Y
F013897Metagenome / Metatranscriptome267Y
F029784Metagenome / Metatranscriptome187N

Sequences

Protein IDFamilyRBSSequence
Ga0160422_100434541F004869N/AMTCDREHYYALHTFLKDDELHEIWNIVEKAMNREGYDVSNSELSMRLYDSELEENIEHDMENLLGSLSEGKDQPQPVDKAAHGHVRKDLDAL*
Ga0160422_100434543F029784AGGAGMCSQIYSHPVEGYKCFANANKSQGTYYTCCDLDTREIRYVTYIYDGYFMGYYLVQSATKVAENFANCQDKIFLSSASNKWPYYKGNDDEYTIDRQYPMQYDIPSLDEVEYSYLDSLLTAGTSK*
Ga0160422_100434546F013897GAGGMNLTKDQLLALMNTIDFATDNDASYEEYTIIKSGTSDLESIKEILYNEYIHQTQ*
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