NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0160422_10084174

Scaffold Ga0160422_10084174


Overview

Basic Information
Taxon OID3300012919 Open in IMG/M
Scaffold IDGa0160422_10084174 Open in IMG/M
Source Dataset NameMarine microbial communities from the Central Pacific Ocean - Fk160115 60m metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1863
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (77.78%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Photic Zone → Seawater → Marine Microbial Communities From The Costa Rica Dome And Surrounding Waters

Source Dataset Sampling Location
Location NameThe Central Pacific Ocean
CoordinatesLat. (o)10.0Long. (o)-145.0Alt. (m)Depth (m)60
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F012583Metagenome / Metatranscriptome279Y
F023620Metagenome / Metatranscriptome209Y
F029129Metagenome / Metatranscriptome189Y
F034959Metagenome / Metatranscriptome173Y

Sequences

Protein IDFamilyRBSSequence
Ga0160422_100841744F012583GGAGGMSLSDQVKIKAFDKYIMRGGDQSLQNIEDLCDFGFEMCQLGYDTESFNDVVIDVICKLTEKLENKS*
Ga0160422_100841745F023620GGAGMKTALFLSEYDLSTVHYLCSFYKDNANLDTQDVEYINELQNRVNSLMEVTK*
Ga0160422_100841746F029129GGAGGMTTKTETKKFIIEVIGEKVKVNKYGDKLHSLIDDLGWEYQRMGRSGRETYDEICHLLNMIPEDEVYMEI*
Ga0160422_100841747F034959GGAGMKIEVNKEQLEILKYAILWYECNDKEEERIVDELETKLYNAQEQDLLRSFTNMGDSINGTQL*
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