NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0160422_10093723

Scaffold Ga0160422_10093723


Overview

Basic Information
Taxon OID3300012919 Open in IMG/M
Scaffold IDGa0160422_10093723 Open in IMG/M
Source Dataset NameMarine microbial communities from the Central Pacific Ocean - Fk160115 60m metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1767
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (85.71%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Photic Zone → Seawater → Marine Microbial Communities From The Costa Rica Dome And Surrounding Waters

Source Dataset Sampling Location
Location NameThe Central Pacific Ocean
CoordinatesLat. (o)10.0Long. (o)-145.0Alt. (m)Depth (m)60
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001479Metagenome / Metatranscriptome687Y
F009691Metagenome / Metatranscriptome314Y
F040144Metagenome162Y

Sequences

Protein IDFamilyRBSSequence
Ga0160422_100937233F040144GGAGGMAQLHEFYVTRKCTKMEYFTVRAENMKEAEIEVEEGWDYYDFDWEEFDHETVEIKEEVIPIQQLALSL*
Ga0160422_100937234F009691AGGAGMKTELNSKDYVTFARRFVKETVATMDIEELRSLVTDRIHEEIQDGENEFGQSGAFDEMIAWNEDVFLSVAKDFELEFEGA*
Ga0160422_100937237F001479AGGAGGMPKEMLFLCDVYTKWLEENNLPHQCASDILYGKDTMNRLTLNQTYWLENFISTWDIIAEHA*
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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