NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0160423_10000569

Scaffold Ga0160423_10000569


Overview

Basic Information
Taxon OID3300012920 Open in IMG/M
Scaffold IDGa0160423_10000569 Open in IMG/M
Source Dataset NameMarine microbial communities from the Costa Rica Dome - CRUD Field 142mm St8 metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)30329
Total Scaffold Genes72 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)32 (44.44%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Photic Zone → Surface Seawater → Marine Microbial Communities From The Costa Rica Dome And Surrounding Waters

Source Dataset Sampling Location
Location NameCosta Rica: the Eastern Pacific
CoordinatesLat. (o)8.7051Long. (o)-86.4906Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007770Metagenome345Y
F042280Metagenome / Metatranscriptome158Y
F092065Metagenome / Metatranscriptome107Y

Sequences

Protein IDFamilyRBSSequence
Ga0160423_1000056950F007770AGGMSGEGLSVSFRRTKMTAKSNDELLAEFQNLVYSNKKIMSHMKWYGRAHSVTLEEHGDEALAEWQREGVAIKDTFCFCITLYESWHEDADIYESHNRDDSFVSLAREFAKDNWLMYFAEGFPAEWIETETIDGEKCWNHFKVKPNDKNIDKICKIWENYGMSMVRAEQFGQTDKMKSSYWTLARDDIKAIMEK*
Ga0160423_1000056957F092065AGGAMQEIIDKIYERMEFCANAHGATQEDEHNYILELSCLNEVLDQIEGFPWDHFENEAN*
Ga0160423_1000056962F042280N/AMKIKNKWDEEFEVSVGDYVGFKCDIEQIGRVKEIQRRGALIIENKNGFDGDYIGGDTEALVGFDEVWKES*
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