NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0160423_10008526

Scaffold Ga0160423_10008526


Overview

Basic Information
Taxon OID3300012920 Open in IMG/M
Scaffold IDGa0160423_10008526 Open in IMG/M
Source Dataset NameMarine microbial communities from the Costa Rica Dome - CRUD Field 142mm St8 metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)8132
Total Scaffold Genes19 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)18 (94.74%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Photic Zone → Surface Seawater → Marine Microbial Communities From The Costa Rica Dome And Surrounding Waters

Source Dataset Sampling Location
Location NameCosta Rica: the Eastern Pacific
CoordinatesLat. (o)8.7051Long. (o)-86.4906Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002858Metagenome / Metatranscriptome525Y
F024320Metagenome / Metatranscriptome206Y
F030067Metagenome / Metatranscriptome186N
F073499Metagenome / Metatranscriptome120Y
F103165Metagenome101N

Sequences

Protein IDFamilyRBSSequence
Ga0160423_1000852611F002858AGGAGMLIDEKSIYEVTGGDYSVYCLGYTQARTVTNDIMRRDPWGGIPFVIRKDLELSLDDRGNVVMTKSTLDKILFIASDELPEGES*
Ga0160423_1000852613F073499AGGAGGMTEQELEQWLRDNPWKANVIYPAGGIGFMMFIMYTCVQIIDSFLTGSLV*
Ga0160423_100085265F103165AGGAMITFYMCQITGKYFEDTLIAKTTERVMDYPDEPSWGLYKTFDGLAVLVDSDVREAREAVDNDS*
Ga0160423_100085268F030067AGGAGMMMSRESWEIAHDEYYDDLEADDYVGLDDISAWKEEEQKIIDELCKRMEKAYDDNR*
Ga0160423_100085269F024320GGAGMTIDEYAVECGGLEDNLGPTVDPLEHAMVEHLVEFDTEMYRLESRRKYIGLPYGHLERLMIELHGEYWRDAL*
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