Basic Information | |
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Taxon OID | 3300012920 Open in IMG/M |
Scaffold ID | Ga0160423_10038940 Open in IMG/M |
Source Dataset Name | Marine microbial communities from the Costa Rica Dome - CRUD Field 142mm St8 metaG |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 3494 |
Total Scaffold Genes | 10 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 6 (60.00%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (50.00%) |
Associated Families | 4 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Oceanic → Photic Zone → Surface Seawater → Marine Microbial Communities From The Costa Rica Dome And Surrounding Waters |
Source Dataset Sampling Location | ||||||||
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Location Name | Costa Rica: the Eastern Pacific | |||||||
Coordinates | Lat. (o) | 8.7051 | Long. (o) | -86.4906 | Alt. (m) | Depth (m) | 5 | Location on Map |
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Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F012584 | Metagenome | 279 | Y |
F024809 | Metagenome | 204 | Y |
F057382 | Metagenome | 136 | N |
F073646 | Metagenome | 120 | Y |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0160423_100389401 | F024809 | N/A | KMIYSQKVLFDDWISRCPIDGVFVDEPVSEVQMDDGRVGYLVKVFLTIDKEDWEQNQSPPGISENSENLPSQNRFEGA* |
Ga0160423_1003894010 | F012584 | N/A | MKLKPVLPENVFKLSEDSLPTQSDVDPHGKIMVYRKDVGWSIIQLTDVIQFLAMKHTHWTFTPETP* |
Ga0160423_100389406 | F057382 | AGGAGG | MSKNDLTLAELKQLISTITFFQLGARTKELKTIKTKLKNQLKEMESK* |
Ga0160423_100389408 | F073646 | AGGAGG | MLQSEYLEIAIELYDIYSENNIHHKKWLTARELAKLKGGPGLIAKVKKRQGLLSELKPIFADYVNTQRQYRSCNTPQQWTCKFDDWLFNEYEFTNQELDELRSNKDRQGGCKTSQKVTNG |
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