Basic Information | |
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Taxon OID | 3300012920 Open in IMG/M |
Scaffold ID | Ga0160423_10048023 Open in IMG/M |
Source Dataset Name | Marine microbial communities from the Costa Rica Dome - CRUD Field 142mm St8 metaG |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 3109 |
Total Scaffold Genes | 9 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 7 (77.78%) |
Novel Protein Genes | 2 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (50.00%) |
Associated Families | 2 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Oceanic → Photic Zone → Surface Seawater → Marine Microbial Communities From The Costa Rica Dome And Surrounding Waters |
Source Dataset Sampling Location | ||||||||
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Location Name | Costa Rica: the Eastern Pacific | |||||||
Coordinates | Lat. (o) | 8.7051 | Long. (o) | -86.4906 | Alt. (m) | Depth (m) | 5 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F025520 | Metagenome | 201 | Y |
F089953 | Metagenome | 108 | N |
Protein ID | Family | RBS | Sequence |
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Ga0160423_100480231 | F025520 | N/A | MAIYEDYYVIRSTSYIKNVPTFLDTDFLKELKNFDDTLKPHISELDTNVTYYGKPAIKATLPTCFIEIEYKTSDGHFLINHEVFLYEEDYPNMEALEAYKEATSYGFASQVTSEINDLVDCHHNSQGCMCLSLGDY* |
Ga0160423_100480236 | F089953 | GGAG | MEDLINEQILENIHEGYEIYKVTLDDNVEIVIKYAIRERSCFADQDLKLVRHNNMPFFPTLEDAEKALSEIVQKRFEEQAQ* |
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