NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0160423_10048666

Scaffold Ga0160423_10048666


Overview

Basic Information
Taxon OID3300012920 Open in IMG/M
Scaffold IDGa0160423_10048666 Open in IMG/M
Source Dataset NameMarine microbial communities from the Costa Rica Dome - CRUD Field 142mm St8 metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3086
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (37.50%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Photic Zone → Surface Seawater → Marine Microbial Communities From The Costa Rica Dome And Surrounding Waters

Source Dataset Sampling Location
Location NameCosta Rica: the Eastern Pacific
CoordinatesLat. (o)8.7051Long. (o)-86.4906Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F054361Metagenome140Y
F060349Metagenome / Metatranscriptome133Y
F072850Metagenome121Y
F092866Metagenome107Y

Sequences

Protein IDFamilyRBSSequence
Ga0160423_100486662F060349N/AMDKNKKKVMKQYPNAYIEYGPEGARVMNGETFIAEEYYMPNTSDEDKAWEYAAMSCKLTQNFNRAHPARMDLKDVESKLNRIHRRKKRGRRVK*
Ga0160423_100486664F054361N/AMGYVNNTAQYDQKKVRKYGKLYGSIDFEVNENLSTHNFENNEAPVVGKLHIGNKAFEVTYQELDMIARTMNTSKDIVNRRYKMGMMR*
Ga0160423_100486665F092866GGAMGFHKRYVDDEQIIDIYRRNGCQAVIDWFTKGVDALIISGDLAERVHTALNILTVDKIQGFNVISEIISDASIEKGFEN*
Ga0160423_100486667F072850N/AMKLNELEIWEDDFDLFVALDDSDKIEFLFDATQIGMEAAVIKQVARLTEKYQMREPIVQVTDYEVGPYRISVTEYPDKLHINSNSLRAIRRFVEKLWNDGTLLRRVKEKKTEFDIYKYLRVYDVIGKVEPICSN*
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Institute for Fundamental Biomedical Research
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