Scaffold Ga0160423_10725220

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

x

This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK

Scaffold Ga0160423_10725220

Scaffold Ga0160423_10725220

Overview

Basic Information
Taxon OID	3300012920 Open in IMG/M
Scaffold ID	Ga0160423_10725220 Open in IMG/M
Source Dataset Name	Marine microbial communities from the Costa Rica Dome - CRUD Field 142mm St8 metaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	670
Total Scaffold Genes	2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Photic Zone → Surface Seawater → Marine Microbial Communities From The Costa Rica Dome And Surrounding Waters

Source Dataset Sampling Location
Location Name	Costa Rica: the Eastern Pacific
Coordinates	Lat. (^o)	8.7051	Long. (^o)	-86.4906	Alt. (m)		Depth (m)	5
Location on Map

Zoom:	Powered by OpenStreetMap^©

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004325	Metagenome / Metatranscriptome	443	Y
F027869	Metagenome	193	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0160423_107252201	F004325	N/A	TEKADKFLQSIGTAGGAIGSPQLIGFGGMDTMSQVAAGNRDEYANIRMREGDTRVVEGSKMPSDLDASYLKLNLPGSPLPVNGLLAPQNMRAAEQTQNMIRTEEQMFLAQYMPAAGLMQLPVGQPPLESRKGKK*
Ga0160423_107252202	F027869	AGG	MEHKKAKKAVKMAEQAMELMALEEAMAEANEADLQPEDGYINPMGRIGTVPPSTYSLGNMLNGTTTQSVINPET*

© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.