NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0137394_10798395

Scaffold Ga0137394_10798395


Overview

Basic Information
Taxon OID3300012922 Open in IMG/M
Scaffold IDGa0137394_10798395 Open in IMG/M
Source Dataset NameVadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk1.16 metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)791
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil → Vadose Zone Soil And Rhizosphere Microbial Communities From The Eel River Critical Zone Observatory, Northern California To Study Diel Carbon Cycling

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)39.7291Long. (o)-123.6419Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008566Metagenome331Y
F026141Metagenome199Y

Sequences

Protein IDFamilyRBSSequence
Ga0137394_107983951F026141N/AALVFTEWLLLTPPGNDVTRPQKEWHQERSFDTLQQCASYQEREADEWIKRMETTPKGSTDYVTYDRTATRFLLGKCVLAESAS*
Ga0137394_107983952F008566GGAGMKLKDITESSGRWSTPSGSLEANARVADGILVDLSLWGTSIIGLAVQCPDGKYFGSIGAPRIVYDQVLEFLKRDHGRKLRELMDAEVDISDVIQ*

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