NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0137413_10010829

Scaffold Ga0137413_10010829


Overview

Basic Information
Taxon OID3300012924 Open in IMG/M
Scaffold IDGa0137413_10010829 Open in IMG/M
Source Dataset NameVadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_16fungal (Illumina Assembly)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4464
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil → Vadose Zone Soil And Rhizosphere Microbial Communities From The Eel River Critical Zone Observatory, Northern California To Study Diel Carbon Cycling

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)39.7291Long. (o)-123.6419Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000173Metagenome / Metatranscriptome1777Y
F001909Metagenome / Metatranscriptome619Y
F001983Metagenome / Metatranscriptome608Y

Sequences

Protein IDFamilyRBSSequence
Ga0137413_100108291F001983AGGAMTRKNTWATLIAAVALSLPLTACKDTKTLQENEQLKAHVAELQKENGEMGNNLETMTAARDALMKENEALKAELKARKTKRTKAASGKHHRK*
Ga0137413_100108292F000173GGAGGMKTFEVHFRYKDRSEETVESTVKVDASNLPGGVAKATREFVKALDRKQRFDMNKNGLEITAKSAGTATEARAESSEEAAAG*
Ga0137413_100108293F001909N/AVRPSDPQRHDFDEILPTVNTSRDSVYFATKNEFYKEGMRVFVTYPYSDGPGSLNREYLGKVVRVEDLGNGRRGIAVEFLMPLYLGGKETLK*
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