NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0137419_10063484

Scaffold Ga0137419_10063484


Overview

Basic Information
Taxon OID3300012925 Open in IMG/M
Scaffold IDGa0137419_10063484 Open in IMG/M
Source Dataset NameVadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Illumina Assembly)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2432
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil → Vadose Zone Soil And Rhizosphere Microbial Communities From The Eel River Critical Zone Observatory, Northern California To Study Diel Carbon Cycling

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)39.7291Long. (o)-123.6419Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002331Metagenome / Metatranscriptome569Y
F005023Metagenome / Metatranscriptome414Y
F047850Metagenome / Metatranscriptome149Y

Sequences

Protein IDFamilyRBSSequence
Ga0137419_100634842F002331AGGMKRTVLTVALSAFLATPAAAQWLGEPVWNSPKGGTGVTVSGDYGKPNSDYGKGNTWGGRASLGIGTITLTAGVARWKPDLATESFTSIGGNAAFRLIGGSLLPFSLNLQVGAARTDSANSTPAQTAVTGAVGFSVPLPTPGISIEPYFSPGIRYRSVSGLGNSTEFGYVFGANLSFGLVGVHLAYDNEKVKGGGSRRVFGVGAHVDFHLPLGM*
Ga0137419_100634843F005023AGGGGGMTRAALTLGLVLLATPAAAQWLGEPTWNHPNAGSGFTIYGDYTKPSSDVGGGNSFGGRVALGAGVFTLTGGVSSWKSDLVSDRITTIGGTATFRLIGGSLIPLAMNLQLGAGHSMEITSTTTTVPVQTMGVAAVGVSVLLPTPVVSVEPYVSPGMRYHHYSNVAPGAPDHETNFGWVIGGNLGFGPIGLHLAYDSEKFGDGKTHAVFGMGASIGLRSSGP*
Ga0137419_100634844F047850GGAGGVLALTLSGCALTLDSSHLGVPVSLAGSAQRPDSGTPFRVTKHAVYMLLGLVQVAQPNLEDVLAGQVSTGARITN
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