NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0137416_10486572

Scaffold Ga0137416_10486572


Overview

Basic Information
Taxon OID3300012927 Open in IMG/M
Scaffold IDGa0137416_10486572 Open in IMG/M
Source Dataset NameVadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Illumina Assembly)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1061
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil → Vadose Zone Soil And Rhizosphere Microbial Communities From The Eel River Critical Zone Observatory, Northern California To Study Diel Carbon Cycling

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)39.7291Long. (o)-123.6419Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001491Metagenome / Metatranscriptome685Y
F092403Metagenome / Metatranscriptome107Y

Sequences

Protein IDFamilyRBSSequence
Ga0137416_104865721F001491GGAMSKSTPKTGMAPESSAIEQAIARALRDNLERIQRSSEELHHSVNDVVAACGSNKPTNALPSLLRAQTSAAALAASLEVLSRFITVSMQ
Ga0137416_104865722F092403GGAVELQHPAQIISTAKPEAGAGQPAQAPSQVSTTSPASPRLIKFRGKDGRAGILEWNAERISYSGDMEPEASAKALYDSLWGKSYGCESGKLLSVSDKSTPAPQPLHFKFDDTHGTDVYLDGQDGVRYSGSLSVGSSVKLFFEAVRSLYQCKNPAATINPK*
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