Basic Information | |
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Taxon OID | 3300012928 Open in IMG/M |
Scaffold ID | Ga0163110_10000030 Open in IMG/M |
Source Dataset Name | Marine microbial communities from the Costa Rica Dome - CRUD Field 142mm St17 metaG |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 73444 |
Total Scaffold Genes | 119 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 34 (28.57%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (75.00%) |
Associated Families | 4 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Oceanic → Photic Zone → Surface Seawater → Marine Microbial Communities From The Costa Rica Dome And Surrounding Waters |
Source Dataset Sampling Location | ||||||||
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Location Name | Costa Rica: the Eastern Pacific | |||||||
Coordinates | Lat. (o) | 2.0416 | Long. (o) | -97.0511 | Alt. (m) | Depth (m) | 5 | Location on Map |
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Family | Category | Number of Sequences | 3D Structure? |
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F007770 | Metagenome | 345 | Y |
F029710 | Metagenome / Metatranscriptome | 187 | Y |
F059455 | Metagenome | 134 | Y |
F086827 | Metagenome / Metatranscriptome | 110 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0163110_1000003017 | F059455 | GAG | MQVISKTIIGTIEWSEGRTKKELAKQTFWSSSKDFSGLSGLEVKAYTFNNHVGCTAITSQGLSQNKYFQIPVDKIEEFCNSLMEAKKFVESKNNEEV* |
Ga0163110_1000003032 | F029710 | GGAG | MKNKDAKIGEEGWYSWLTIRQDLVGDDLSAPIMWLDDMSEDNLWQEDDMNIDWVEEMDKEGAPIIEDDHLCRDICIEVTCPSKNIDKRRAVGYNIDFDWN* |
Ga0163110_1000003034 | F007770 | N/A | MSGEGLSVSFRRTSRTPMSNSELLEKFQNIVYRSRVMKHMKWYGKAHTLDILEHGDDNRQKFEQEYVAIKDTFQFEISVYESWHEDADLYESHEVEDSFVSLARKFAEDYNLMYFPNGFPAEWIEEEIIDGEKNWNHYNVKPDDKNIDKICDAWYSYGIKKLKANNEKEKKELWHQARDKIKQLMEHKNESRVHCS* |
Ga0163110_1000003035 | F086827 | GGAG | MNTYLELEQKYKEKILKLFFDHAKKVEADHDVKTDGDNTDYWNALKLDDGSFVDYNFHMMSDWDDPDRSWTCEVYPVDPPTEDNKYYSINTNHTLFLAFYYPVTQKSEIEI* |
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