NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0137404_10111406

Scaffold Ga0137404_10111406


Overview

Basic Information
Taxon OID3300012929 Open in IMG/M
Scaffold IDGa0137404_10111406 Open in IMG/M
Source Dataset NameVadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Illumina Assembly)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2223
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (66.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil → Vadose Zone Soil And Rhizosphere Microbial Communities From The Eel River Critical Zone Observatory, Northern California To Study Diel Carbon Cycling

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)39.7291Long. (o)-123.6419Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007488Metagenome / Metatranscriptome350Y
F009917Metagenome311Y
F015771Metagenome / Metatranscriptome252Y

Sequences

Protein IDFamilyRBSSequence
Ga0137404_101114061F015771N/AFDLAITDPAVTRPGLFYFVESDVTPAFSAPRVYFLGASRNLYVQLGNQTLYWRAYSQYVGSLASAPVTFGSPAAAVTGGGTSGPAPLPSSGSGALPNGLLRGGNGFGVVPGARVVKQTVL
Ga0137404_101114063F007488N/AMKIRAYEESDLEALRAIHARQGFGYAFPDLGDPLFLTKLVLGREEDGKGIAGAALLRLTAEAYLLLDPDAGSPREKWESLMALHETTRRDALARGLEDVHAWLPPAIAKKFGKRLTRLGWVRDDEWTPYCKRLT*
Ga0137404_101114065F009917GGAVVFSLGAQLVVFLRWMHRRMRDDEIQRVFVRDLALRHLPNIYRALHIIAEQQGIKLEEMPMVNYVDLRNGGRHR*
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