Scaffold Ga0153915_10000884

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0153915_10000884

Scaffold Ga0153915_10000884

Overview

Basic Information
Taxon OID	3300012931 Open in IMG/M
Scaffold ID	Ga0153915_10000884 Open in IMG/M
Source Dataset Name	Freshwater wetland microbial communities from Ohio, USA - Open water 3 Core 3 Depth 3 metaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	27745
Total Scaffold Genes	44 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	7 (15.91%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Freshwater Wetlands → Freshwater Wetland Microbial Communities From Ohio, Usa, Analyzing The Effect Of Biotic And Abiotic Controls

Source Dataset Sampling Location
Location Name	USA: Ohio, Lake Erie, Old Woman Creek
Coordinates	Lat. (^o)	41.3778	Long. (^o)	-82.5108	Alt. (m)		Depth (m)	0
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F003622	Metagenome / Metatranscriptome	476	Y
F028664	Metagenome	191	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0153915_1000088431	F028664	N/A	LSYICKVKGNEAKINTTIMKKILVGGQALRNMGSDRYTSDVDYLIKDENNTSAFIHDVTNDIDYLNASGNKFFNEIYKLEEGNDQASAQSLLELKAYAFVQHCQNFNFKKADACEYDIKFLVRFADLKSCKIAVKYMTAGEYSEVEKIILSVKK*
Ga0153915_1000088442	F003622	N/A	MRAYKQELEIIANDILNQNADAKGDENKPNYTNREFMNAVIIFQTALMDKMYDNQNYDKMNVDDRLKMTEKCGLDLRKLIHTYTNLDTHKIEQFL*

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