NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0153915_10020312

Scaffold Ga0153915_10020312


Overview

Basic Information
Taxon OID3300012931 Open in IMG/M
Scaffold IDGa0153915_10020312 Open in IMG/M
Source Dataset NameFreshwater wetland microbial communities from Ohio, USA - Open water 3 Core 3 Depth 3 metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6532
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)10 (90.91%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Freshwater Wetlands → Freshwater Wetland Microbial Communities From Ohio, Usa, Analyzing The Effect Of Biotic And Abiotic Controls

Source Dataset Sampling Location
Location NameUSA: Ohio, Lake Erie, Old Woman Creek
CoordinatesLat. (o)41.3778Long. (o)-82.5108Alt. (m)Depth (m)0
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F034408Metagenome / Metatranscriptome175Y
F061612Metagenome / Metatranscriptome131Y
F074512Metagenome119Y

Sequences

Protein IDFamilyRBSSequence
Ga0153915_1002031210F074512GAGMSTVLLPLALIGATLLVVRSVVFGPLRRFWPALFSCAQCVGTWVGLAAGATGIVTTGHGRVLDAIIIGAATSFLSLLADATLLKLLGDPSEGNGP*
Ga0153915_100203122F034408AGGAGMIPRDHDIRNLAIYAPRFAYAMIIGVPRVPFVNDIPIQFSSSTVNAPPVNQNFQNNLSQDTLIERVSYSISQPNSFPGSPFQSLYFNQLKQSGQTGIGVQMSVYGGPKYEINNTFTELGNLIDVFAMTWPNGWPLYKQSNVKVSAILTQTPVSVPMTATLTFLGWQHLDKSIDDMSDADARDALRKLGIETPDLKSLLPQR*
Ga0153915_100203129F061612AGGAGMARTIHEETMCCGYKRCPTIKIFEDGSIELSDDDAEIGSTGTIKLRPEAVARLVELAGKK
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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