NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0162653_100012997

Scaffold Ga0162653_100012997


Overview

Basic Information
Taxon OID3300012937 Open in IMG/M
Scaffold IDGa0162653_100012997 Open in IMG/M
Source Dataset NameAgricultural soil microbial communities from Tamara ranch near Red Deer, Alberta, Canada - d1t5i015
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterShell Corporation
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1034
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Agricultural Field → Unclassified → Unclassified → Soil → Subsurface Hydrocarbon Microbial Communities From Various Worldwide Shell Locations

Source Dataset Sampling Location
Location NameRanch near Red Deer, Alberta, Canada
CoordinatesLat. (o)52.172047Long. (o)-113.738964Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F036898Metagenome / Metatranscriptome169Y

Sequences

Protein IDFamilyRBSSequence
Ga0162653_1000129971F036898N/AMMSEIVVSGELRIFLANRAIALGWALKGFCKPCAHRLFTIARWLVPEVQRFLLHRTGSQNRNRRIFDFAVDLGTLLSRIQPLGVVGGFVIVLVLLGSLNLALRLSATDTQPLVENSAFQDDPQIRLESRMFSVSKTSEGMQEFDLETGSISGAQIAPVPLPLRKPERISKVLNGKGAKANPATQKRIAQKKRVQPKAMR*
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