NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0164242_10227868

Scaffold Ga0164242_10227868


Overview

Basic Information
Taxon OID3300012942 Open in IMG/M
Scaffold IDGa0164242_10227868 Open in IMG/M
Source Dataset NameMiracle-Growth compost microbial communities from Emeryville, California, USA - Original compost - Miracle growth compost (MG)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1460
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Compost → Lignin-Adapted Enriched Soil Microbial Communities From Emeryville, California, Usa

Source Dataset Sampling Location
Location NameUSA: Emeryville, California
CoordinatesLat. (o)37.83Long. (o)-122.29Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F031074Metagenome183Y

Sequences

Protein IDFamilyRBSSequence
Ga0164242_102278683F031074GGCGGMATAVRKLDLRVGELVEIEGRRYEVVQARDGDGLTLEPPITPMAELDEKRGAEAASQEEFERLFGHLPGDAEG*

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