NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0164241_10449900

Scaffold Ga0164241_10449900


Overview

Basic Information
Taxon OID3300012943 Open in IMG/M
Scaffold IDGa0164241_10449900 Open in IMG/M
Source Dataset NameBackyard soil microbial communities from Emeryville, California, USA - Original compost - Back yard soil (BY)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)925
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Lignin-Adapted Enriched Soil Microbial Communities From Emeryville, California, Usa

Source Dataset Sampling Location
Location NameUSA: Emeryville, California
CoordinatesLat. (o)37.83Long. (o)-122.29Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F051953Metagenome / Metatranscriptome143N

Sequences

Protein IDFamilyRBSSequence
Ga0164241_104499002F051953N/AVRRYWDRPLGSKLIILGAIAFLLSMLGPWTRVCVATATVAARKCGWTTGFEGSDFGIYAALFAVAILAFELLPVLWPRLSMRGWPTAVITAILGVGLALCALVKLIEDNEFQTRWAWVGFAIALFVMLVALLRVRHRWGTRGQGDPAP
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