NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0126375_10288077

Scaffold Ga0126375_10288077


Overview

Basic Information
Taxon OID3300012948 Open in IMG/M
Scaffold IDGa0126375_10288077 Open in IMG/M
Source Dataset NameTropical forest soil microbial communities from Panama - MetaG Plot_14
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1133
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil → Tropical Forest Soil Microbial Communities From Panama Analyzed To Predict Greenhouse Gas Emissions

Source Dataset Sampling Location
Location NamePanama
CoordinatesLat. (o)9.1086Long. (o)-79.8436Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F018589Metagenome / Metatranscriptome234Y
F058408Metagenome / Metatranscriptome135Y
F063036Metagenome / Metatranscriptome130Y

Sequences

Protein IDFamilyRBSSequence
Ga0126375_102880771F018589AGGAGGMYRPYPNFPADSRPLRDVQSLLRELTQDFATSFNTGNYDQAASMFSQDGTLMAPHYEGVSGQKPVEQLLRRLGEAGYCNL
Ga0126375_102880772F063036GAGGMTNRVSYAPQDFQKMCKQAERDHETKKLVFLMERVKKQIEERGLNTEISKLGPAAVRSDSEVVRLPIRSVPLER*
Ga0126375_102880773F058408GAGMAKLLENHPHAGFRLVGASVFYRQILGTLLFCALSVSLASARDLALVSNKANSLATITLPELVKVCKAQTNRWPDG
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