NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0126375_11156966

Scaffold Ga0126375_11156966


Overview

Basic Information
Taxon OID3300012948 Open in IMG/M
Scaffold IDGa0126375_11156966 Open in IMG/M
Source Dataset NameTropical forest soil microbial communities from Panama - MetaG Plot_14
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)641
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil → Tropical Forest Soil Microbial Communities From Panama Analyzed To Predict Greenhouse Gas Emissions

Source Dataset Sampling Location
Location NamePanama
CoordinatesLat. (o)9.1086Long. (o)-79.8436Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F058418Metagenome135Y

Sequences

Protein IDFamilyRBSSequence
Ga0126375_111569661F058418N/ARRALREADPEAARQVRLLLWWLATAFVLVAVSGRQRDRYYLPLCPATALLIGWWYPTLAWRWRARAFAGAWIAVVVGGVVLVTWDTPRFNATTDLRDLRAALARQSAPLFAVDVQDLAVSFNLDQAVVNDTSYQTFAAHAQHGRTGYLIISDRALSAQPIDPCMRRIASGVVTGRPFTVLDPTGCGKGASNTRSDDDAGNAGPLGWPCSRSVL

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