Basic Information | |
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Taxon OID | 3300012949 Open in IMG/M |
Scaffold ID | Ga0153798_10134161 Open in IMG/M |
Source Dataset Name | Switchgrass enrichment cultures co-assembly |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 1028 |
Total Scaffold Genes | 5 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 4 (80.00%) |
Novel Protein Genes | 1 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (100.00%) |
Associated Families | 1 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales | (Source: UniRef50) |
Source Dataset Ecosystem |
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Engineered → Bioreactor → Unclassified → Unclassified → Unclassified → Switchgrass Degrading → Switchgrass Degrading Microbial Communities From High Solid Loading Bioreactors In New Hampshire, Usa |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Dartmouth College, New Hampshire | |||||||
Coordinates | Lat. (o) | 43.726 | Long. (o) | -72.1429 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F010244 | Metagenome / Metatranscriptome | 306 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0153798_101341614 | F010244 | AGGAGG | MTYKVKFTNSDKSRAHIGRAKVREGKEVYRHPEGRYIVLEFQGQSGKFREAFWPEEVVKQELFL* |
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