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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300012952 Open in IMG/M |
| Scaffold ID | Ga0163180_10000104 Open in IMG/M |
| Source Dataset Name | Marine eukaryotic phytoplankton communities from the Atlantic Ocean - Atlantic ANT 4 Metagenome |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 42145 |
| Total Scaffold Genes | 50 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 35 (70.00%) |
| Novel Protein Genes | 5 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (80.00%) |
| Associated Families | 5 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → Proteobacteria | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Oceanic → Unclassified → Seawater → Marine Eukaryotic Phytoplankton Communities From The Norwegian Sea, Arctic And Atlantic Ocean |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | North Atlantic Ocean | |||||||
| Coordinates | Lat. (o) | 26.049 | Long. (o) | -17.4585 | Alt. (m) | Depth (m) | 80 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F010695 | Metagenome / Metatranscriptome | 300 | Y |
| F022909 | Metagenome / Metatranscriptome | 212 | Y |
| F033111 | Metagenome / Metatranscriptome | 178 | N |
| F034245 | Metagenome / Metatranscriptome | 175 | N |
| F089156 | Metagenome | 109 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0163180_1000010429 | F089156 | N/A | MQSNEDCGYIDVYERHTTSYTTVTAEDTLAPLIEKLDLLEALKPQILCISWQMDRNYIVDYRIQKLIEAGNMVVCAGGNQDLPVIDITPIAVDGVIKVGGNLHNGHYQNWIDLYDVTIPTQPDSNKAVHEVCELMTNKTLELDFKLGFYSESHVRSAPWPLRLAQTPSNKTKYYEFMPVSNLRYIAGEHLLPSRPDDQVSILSGSIPLSSFVEPRFIDLEDSLPRGITFDPSVGWLYGTFKYKEDMFHRILADINGQLFEYHIISCDADNKPSYEECKKKYFNREYDMPPFDIREYWVPMSRPVKLLEPGDPFIRTYNLNDLHLYRGMS* |
| Ga0163180_1000010430 | F034245 | AGG | MRGITFSEFGNGQNVDMFLHAPTRKLGTPMQEAILTAKEIREKYTKDIYVWCDYSVQHMYSQVAMQAFKMAGIEFVAAIPVLSNDLSKRENDCSIAYCESRGIKYELFHIDVPELFDGPDFMYWGENFPTTQPQMTIVGKFFDLLPDCCIVYPGFMMHVSNSDWTRTKNNGFMPFVPHQTQEHAAEHAGKEYTNFQEHYVNMYASWLFTQSYGDVLKMPTQKFVDNAPHRYYQYEMRTIKQAGFDIKPTTQKLISIELLKSYFGHDKYDKVLRQKLSPFGPLTMKYASLQYTVKVDENLKEMLETHYEQDFDFLNKLF* |
| Ga0163180_1000010433 | F022909 | GGA | MDDSSNQEILRTFFDGKIGCVELDDYWMPMLEKFCDVAGSLGFTQNASPDAMKVDKIKYHCMVHIPTEEIYAVAGVQYMPEYKEGYYRVWTRLSRIPNEHIPMTKFARYGRGSEMPEFDGLLYFNCKWASEQDNFKATFGTTLANKAYSDNYVRSTNTITDYIKRNWWKQKGIAVPEGIYDFYQVPQVVWNINFNKFKEYSV* |
| Ga0163180_1000010440 | F033111 | GGAG | MDRVEIPYYFEVPELPMPPFDVTEYFIDEAEREIAKTDVKTSDRLTGESRSNTANWYQSFIKVEENSSQDKRDFKQVNLYEEANFNLTKNLKEWLQDTLNLKFSSVLMLRTPANANSRWHCEGPVFHTRQCALNFPVFGDFEKSEAQWATFPRFKNIDPRENEKHGFVTQTDMKETEMLCRWTNQTVPGFQNTMIMHRGYNEHCDTDRVILSAAVEDTADINVVYKKYIDGKLLK* |
| Ga0163180_1000010446 | F010695 | AGAAGG | MSNLNTTNQHPEKIHVIPGYAIGSFTCYNANEDDGKSVNIQLTSLEEMWYGHEENIDHPAHSEYPVSVNVPHMKVMRERVFDSVLNRTGIDVRKFDSILHATTSPGRDEKGNILDYANNNIIRNV* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |