NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0163180_10000935

Scaffold Ga0163180_10000935


Overview

Basic Information
Taxon OID3300012952 Open in IMG/M
Scaffold IDGa0163180_10000935 Open in IMG/M
Source Dataset NameMarine eukaryotic phytoplankton communities from the Atlantic Ocean - Atlantic ANT 4 Metagenome
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)16678
Total Scaffold Genes22 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)15 (68.18%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Seawater → Marine Eukaryotic Phytoplankton Communities From The Norwegian Sea, Arctic And Atlantic Ocean

Source Dataset Sampling Location
Location NameNorth Atlantic Ocean
CoordinatesLat. (o)26.049Long. (o)-17.4585Alt. (m)Depth (m)80
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005619Metagenome / Metatranscriptome395Y
F027527Metagenome / Metatranscriptome194Y

Sequences

Protein IDFamilyRBSSequence
Ga0163180_1000093516F027527AGTAGGMAQSITEVILGTGNLFVASESDLNGGSPNTTFPTNPAATPASSYWDNIGYSEGGFSLEYDKTFDDIMVAEEVDPIKTIKTAQEVRITGELAQASLRNLKFAMAGGTTSASTPGSGYTTLTPPTTDSFTEMSLLLRVNAPGTDDGGTAKLRDIQVPRAVNVGAFSMVHAKAPQKVTITVEYKVLKPNSDAPFANIFKVIDTD*
Ga0163180_100009354F005619AGCAGGMTEFNFPEGTKREDAVNELIDDEQFKEMVLKQFNYMRIKGINLVQDADDMVNLYLKICKAFEEASDK*
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