NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0163180_10014152

Scaffold Ga0163180_10014152


Overview

Basic Information
Taxon OID3300012952 Open in IMG/M
Scaffold IDGa0163180_10014152 Open in IMG/M
Source Dataset NameMarine eukaryotic phytoplankton communities from the Atlantic Ocean - Atlantic ANT 4 Metagenome
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4502
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (60.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Seawater → Marine Eukaryotic Phytoplankton Communities From The Norwegian Sea, Arctic And Atlantic Ocean

Source Dataset Sampling Location
Location NameNorth Atlantic Ocean
CoordinatesLat. (o)26.049Long. (o)-17.4585Alt. (m)Depth (m)80
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F010276Metagenome306Y
F033764Metagenome176Y
F100990Metagenome102N

Sequences

Protein IDFamilyRBSSequence
Ga0163180_100141522F010276GAGMPDNDLDRRLAVVEQTFGLRTRDNAVATPNPNDVRATHSDNINWKALYKVLESEVETIVLDPNCPQYVKDWGQRIMQRLAQHLPR*
Ga0163180_100141527F100990AGGGGGMGKNYDYTQIFDGVYPLTEYTPIPMTEQLFWSRVGWLQQAMIRADNFEFRLLWFNKLQELMKLQP*
Ga0163180_100141528F033764AGGAGMYVNKYVVNNIGTKWANGRSKKNQLLDSLDGNDGIFLKRLVPLLEQWCETVNGEHSTKIVELTINVKEGDR*
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