Scaffold Ga0163180_10135888

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0163180_10135888

Scaffold Ga0163180_10135888

Overview

Basic Information
Taxon OID	3300012952 Open in IMG/M
Scaffold ID	Ga0163180_10135888 Open in IMG/M
Source Dataset Name	Marine eukaryotic phytoplankton communities from the Atlantic Ocean - Atlantic ANT 4 Metagenome
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1616
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Seawater → Marine Eukaryotic Phytoplankton Communities From The Norwegian Sea, Arctic And Atlantic Ocean

Source Dataset Sampling Location
Location Name	North Atlantic Ocean
Coordinates	Lat. (^o)	26.049	Long. (^o)	-17.4585	Alt. (m)		Depth (m)	80
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F004325	Metagenome / Metatranscriptome	443	Y
F027869	Metagenome	193	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0163180_101358882	F027869	N/A	MNHAKAKKAKGMAEQALDLMILEDEMAKAGEADLQPEDGYVTPMHRIGVVPSASYSLGNMVDGYSARAVENVIG*
Ga0163180_101358883	F004325	N/A	KHKKASTSEKADQFLQGIGTAGGPIGSPQLIGFGGSDTLSQLAAGNRDEYANIRMKQGDTRVVEAAKMPSDLDASYLKLNLPGSPLPSNGLLAAQNLKAAEKNQDMIISQEQMFLAKFIPAAGLSQLPLGQPTLE*

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