NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0163180_10139757

Scaffold Ga0163180_10139757


Overview

Basic Information
Taxon OID3300012952 Open in IMG/M
Scaffold IDGa0163180_10139757 Open in IMG/M
Source Dataset NameMarine eukaryotic phytoplankton communities from the Atlantic Ocean - Atlantic ANT 4 Metagenome
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1596
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (100.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Seawater → Marine Eukaryotic Phytoplankton Communities From The Norwegian Sea, Arctic And Atlantic Ocean

Source Dataset Sampling Location
Location NameNorth Atlantic Ocean
CoordinatesLat. (o)26.049Long. (o)-17.4585Alt. (m)Depth (m)80
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F030600Metagenome185Y
F058958Metagenome / Metatranscriptome134N

Sequences

Protein IDFamilyRBSSequence
Ga0163180_101397572F058958GGAMTLRNQIIEQLGGRLFTATFTKADGSLRHAYGQVIADDRLTDDQPNVITFIDYSIAAEMLEAGKSNVRRMKLEAGTVYTIKSGKTIISNVA*
Ga0163180_101397576F030600AGGAMANIYYHTPILGCTSLVVWSVGNSLTEIGKTLAKHNQIWPDSSSEGQVITIGKKQRGRHGIRPIKGYRLHGDKLTKISELRPSGFWVTT*

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