NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0163180_10544085

Scaffold Ga0163180_10544085


Overview

Basic Information
Taxon OID3300012952 Open in IMG/M
Scaffold IDGa0163180_10544085 Open in IMG/M
Source Dataset NameMarine eukaryotic phytoplankton communities from the Atlantic Ocean - Atlantic ANT 4 Metagenome
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)875
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Seawater → Marine Eukaryotic Phytoplankton Communities From The Norwegian Sea, Arctic And Atlantic Ocean

Source Dataset Sampling Location
Location NameNorth Atlantic Ocean
CoordinatesLat. (o)26.049Long. (o)-17.4585Alt. (m)Depth (m)80
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000302Metagenome / Metatranscriptome1337Y
F007531Metagenome / Metatranscriptome349Y
F092187Metagenome107Y

Sequences

Protein IDFamilyRBSSequence
Ga0163180_105440851F092187N/AEADDECTRCGAKNSQFVDKEITGWEDEDEMEGVEEIW*
Ga0163180_105440852F000302AGGAGMVETMSADTKLRIADLERQKIELENQLETLGYANNLVRMHKIEEEIYEIEDTIRKLMP*
Ga0163180_105440853F007531AGGAGMYKKIEKKIESFVRAELAGVHRIDFVHGTLYLTLDKPSLCDFIHKEIRTFYKENINPEGGVNMYAVGDEFAFDFVPGDREAPVFSDEDYSGKEGMMPDDIDKGVWSDFAEEGLMKDMPDEVDTLLELENEMKKGK*
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