NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0163179_10002041

Scaffold Ga0163179_10002041


Overview

Basic Information
Taxon OID3300012953 Open in IMG/M
Scaffold IDGa0163179_10002041 Open in IMG/M
Source Dataset NameMarine eukaryotic phytoplankton communities from the Atlantic Ocean - Atlantic ANT 2 Metagenome
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)14158
Total Scaffold Genes22 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)13 (59.09%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Seawater → Marine Eukaryotic Phytoplankton Communities From The Norwegian Sea, Arctic And Atlantic Ocean

Source Dataset Sampling Location
Location NameNorth Atlantic Ocean
CoordinatesLat. (o)34.876Long. (o)-13.1352Alt. (m)Depth (m)80
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000681Metagenome / Metatranscriptome939Y
F003326Metagenome / Metatranscriptome494Y
F024645Metagenome / Metatranscriptome205Y

Sequences

Protein IDFamilyRBSSequence
Ga0163179_100020411F000681N/AMNKGVEMYKRCEHYYSVISTEDLYKELNKNYTGETDLVQSLMSRAISNGWVETRHELGVANEELWSLNDWPEGEGFGSSDHYDYDRRIKETIAFERKFLQAENELVQINKLTESPKNDT
Ga0163179_1000204112F024645N/AMNQGVEMLKNKKQFYITELHFGDDGLESYTDHSGPFTLNKARRIMEKLLKNPGKWINPYVMDIRGPRHTNRWGANTEFYPPKEDR*
Ga0163179_100020416F003326AGGMATIEQKKKLIKTIKNPIRYFRLNFSRYGGEVAMGTITKDQYDYWSEKDGFEEYMGLVDSDPENANKEIPKQAQFDQSFYEYNNICHMSGPEWADSQTMYIEELDKNGQSLEDDDGGYIQDIQHDFGDLESLGAEVVCDEEHHASSKSCENEYYVFGQYFNKGGWHTPDIIKTGPDGIEIDKLKIRYENADGFKVFNEIEYDGEAYYLEEDSTGKSSSFYVAKGDNLNG*
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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