Basic Information | |
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Taxon OID | 3300012953 Open in IMG/M |
Scaffold ID | Ga0163179_10002048 Open in IMG/M |
Source Dataset Name | Marine eukaryotic phytoplankton communities from the Atlantic Ocean - Atlantic ANT 2 Metagenome |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 14136 |
Total Scaffold Genes | 22 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 16 (72.73%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (66.67%) |
Associated Families | 3 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Oceanic → Unclassified → Seawater → Marine Eukaryotic Phytoplankton Communities From The Norwegian Sea, Arctic And Atlantic Ocean |
Source Dataset Sampling Location | ||||||||
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Location Name | North Atlantic Ocean | |||||||
Coordinates | Lat. (o) | 34.876 | Long. (o) | -13.1352 | Alt. (m) | Depth (m) | 80 | Location on Map |
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Family | Category | Number of Sequences | 3D Structure? |
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F024652 | Metagenome | 205 | Y |
F042972 | Metagenome / Metatranscriptome | 157 | N |
F067842 | Metagenome / Metatranscriptome | 125 | Y |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0163179_1000204815 | F042972 | AGG | MVKFDNIFYVGDTVETKYGFNKIKKIEIMPEPRHSSKCGIDVDKMHEKLIDHCIIDLDNRHFIYGDEIVKTS* |
Ga0163179_1000204816 | F067842 | GGAG | MHEYQTCIYTQDNITKSVTLSVVECGYSEKNSTDNAFDTFKCLALNPNEILKIETKGI* |
Ga0163179_1000204819 | F024652 | N/A | MSTEIFNMNMSFSIDDIQEKDEWLERSELEAKQIHSKVSTARGRTYDQILEVCLYGHAAEQYLIETGWEDDLRKYKDLIDPLGDNVEIKVTEHAGNIPYVLDRCKEAKLETWRNYPDIVYVFTNDKKSKEYVHQGIYVWNGNKFNRNEIS* |
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