Scaffold Ga0163179

Basic Information
Taxon OID	3300012953 Open in IMG/M
Scaffold ID	Ga0163179_10002100 Open in IMG/M
Source Dataset Name	Marine eukaryotic phytoplankton communities from the Atlantic Ocean - Atlantic ANT 2 Metagenome
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300012953 Open in IMG/M

Scaffold ID

Ga0163179_10002100 Open in IMG/M

Source Dataset Name

Marine eukaryotic phytoplankton communities from the Atlantic Ocean - Atlantic ANT 2 Metagenome

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	13960
Total Scaffold Genes	36 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	23 (63.89%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	5 (83.33%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

13960

Total Scaffold Genes

36 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

23 (63.89%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

5 (83.33%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Seawater → Marine Eukaryotic Phytoplankton Communities From The Norwegian Sea, Arctic And Atlantic Ocean

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Oceanic → Unclassified → Seawater → Marine Eukaryotic Phytoplankton Communities From The Norwegian Sea, Arctic And Atlantic Ocean

Source Dataset Sampling Location
Location Name	North Atlantic Ocean
Coordinates	Lat. (^o)	34.876	Long. (^o)	-13.1352	Alt. (m)	Depth (m)	80
Location on Map

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Source Dataset Sampling Location

Location Name

North Atlantic Ocean

Coordinates

Lat. (^o)

34.876

Long. (^o)

-13.1352

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F018286	Metagenome	236	Y
F030886	Metagenome	184	Y
F041168	Metagenome	160	Y
F057352	Metagenome	136	Y
F059942	Metagenome	133	Y
F074757	Metagenome	119	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0163179_1000210012	F059942	AGGA	MKVGDLISFKPIDFGLEDWSNPCIVMLEYDSPNEGLWSVWCDGVFCVIDDTNYEILHLTSSSLDDGAAG*
Ga0163179_1000210013	F018286	GGAG	MNILTTFILLGMVDSHDEHFATVELSTNPASNGGPATAVMPVSAFPCEIYEGKVFYVVKLHDDEDATIVCHKERPDESR*
Ga0163179_1000210015	F030886	GGAG	MGYHDRKPPDYERVGIGVVNPLMRIERKLREVQDILDNISDASVLTANDLKIKIQRILDD
Ga0163179_1000210019	F041168	AGTAG	MKQAKVRNRTVGFFRRDAEAPFINLEMFETIKDATGIPHYWRDSEGNISQFWHEGVIPKGTGVMCKHRERGMKHTFWVVTDPESDLVGKMFIVGHTFKDRKETTDERFEYSNVSPTLKYSILAEKPLTK*
Ga0163179_100021004	F074757	N/A	VKVGDLVTLSSYCLQRADMWTWRQKIWFDKKPLVGLVVRVEDNPWDKSLSLSTNEKTFYYINWVQEGPGSRYGRTYHRTDGYFLRNDLKFVKKGDFK*
Ga0163179_100021007	F057352	AGGAG	MKLWVLYGTYESELFSSIHLTEKGCALAAIADVLDFLGVGDEESALQVMNDCYAYTETDGKQTEAFEWDHDKMKEMSSKDLWKIFTDWTEISWDRMADRSYNIDAAPQMVQA*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0163179_10002100

Overview

Ecosystem & Geography

Associated Families

Sequences