NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0163179_10003669

Scaffold Ga0163179_10003669


Overview

Basic Information
Taxon OID3300012953 Open in IMG/M
Scaffold IDGa0163179_10003669 Open in IMG/M
Source Dataset NameMarine eukaryotic phytoplankton communities from the Atlantic Ocean - Atlantic ANT 2 Metagenome
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)10385
Total Scaffold Genes19 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)13 (68.42%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Seawater → Marine Eukaryotic Phytoplankton Communities From The Norwegian Sea, Arctic And Atlantic Ocean

Source Dataset Sampling Location
Location NameNorth Atlantic Ocean
CoordinatesLat. (o)34.876Long. (o)-13.1352Alt. (m)Depth (m)80
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F016674Metagenome245Y
F020255Metagenome / Metatranscriptome225Y
F042935Metagenome157Y

Sequences

Protein IDFamilyRBSSequence
Ga0163179_100036691F016674N/AMPKKSNVINFKKEKLKKFDEENEIIFTVDDENYTLGEMVHQASNDNGMEFVFKLDLEDDEETIH*
Ga0163179_100036694F020255AGGAGMPSPSEIQSMLPLYFQLLFFAVAGALIVGVFFSIVGWFFRNAVVIMIIVAILFAVNYGYINLNELFGAVKNDNAFITDLLQR*
Ga0163179_100036697F042935GGAGMFNYANIIRQLEAMSPIHQDEFAQKLIEKNSGLAVAMSTKINIAHQDKYYTDTEAMHESLKQRGHA*
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Institute for Fundamental Biomedical Research
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