NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0163179_10010867

Scaffold Ga0163179_10010867


Overview

Basic Information
Taxon OID3300012953 Open in IMG/M
Scaffold IDGa0163179_10010867 Open in IMG/M
Source Dataset NameMarine eukaryotic phytoplankton communities from the Atlantic Ocean - Atlantic ANT 2 Metagenome
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5953
Total Scaffold Genes15 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (60.00%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Seawater → Marine Eukaryotic Phytoplankton Communities From The Norwegian Sea, Arctic And Atlantic Ocean

Source Dataset Sampling Location
Location NameNorth Atlantic Ocean
CoordinatesLat. (o)34.876Long. (o)-13.1352Alt. (m)Depth (m)80
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000720Metagenome / Metatranscriptome923Y
F003020Metagenome / Metatranscriptome513Y
F004988Metagenome / Metatranscriptome416Y
F009812Metagenome312Y
F011410Metagenome291Y

Sequences

Protein IDFamilyRBSSequence
Ga0163179_1001086710F000720GAGGMTLIKENKGVRKEIPNRMMSATFALPIDGRRVVGILDYTANDTGLTPMAFWIKLKPTDSYLDRELRASGKLISRCLQHGESLKDLVDTLSQDNVVGQMANYLHKNMEDIIMGKPPEKKQRELSTDPYAMKE*
Ga0163179_1001086711F011410AGGAMKDFKIKLEWSTSDFLTWTVLAIGIGLCVVNLVTIYNIYSVIETMWLEIQQVKETNISLFQFIEAHKNDFD*
Ga0163179_1001086713F004988N/AMPKLVETICPRCDGNGYIKVKQKENMVEHDCPMCLEEFLHMGGMVTTNNGYVMLPIENTRINVEGGRESITKWSGETLPEKGKDGP*
Ga0163179_1001086714F003020AGGAMPDISKFKSVSVSMDTHDKLMTLAQKRFEVPVSVQKVIEFLLEKEIKKKKNAKTR*
Ga0163179_100108679F009812AGGAGMDEFEIEWIPEDTGAPYEAADILPDIPSHTIDKICKKKYGHTNWARMGQMTPEDLIGNPHVFDYENGVIFFKNAHMV*
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