Scaffold Ga0163179_10026643

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0163179_10026643

Scaffold Ga0163179_10026643

Overview

Basic Information
Taxon OID	3300012953 Open in IMG/M
Scaffold ID	Ga0163179_10026643 Open in IMG/M
Source Dataset Name	Marine eukaryotic phytoplankton communities from the Atlantic Ocean - Atlantic ANT 2 Metagenome
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	3869
Total Scaffold Genes	6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (50.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
All Organisms → Viruses → Predicted Viral	(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Seawater → Marine Eukaryotic Phytoplankton Communities From The Norwegian Sea, Arctic And Atlantic Ocean

Source Dataset Sampling Location
Location Name	North Atlantic Ocean
Coordinates	Lat. (^o)	34.876	Long. (^o)	-13.1352	Alt. (m)		Depth (m)	80
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F044142	Metagenome	155	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0163179_100266434	F044142	N/A	MDNILLDFDRVKILEPHETESVFITLESMRKLWLQRTNWHPALEIAGPDSNLEEYIHYYTLGATLYMDARDRGWKTYKKMTEMYNRVLWKKLGWLYDKFLIGISNSLGECEYEKDLALPGFHIYEFEDAPDNRKHHRCLHYDGQWFYGRKYFKEKYTNIDYRNQLSYTFTIKVPHNGAAIALWNLPEDKRQKANDIKYMLDQDIIRRYETLEYVKEIKDNNTIEDPWKFKLFDEDCGDLEQYMPIVIPHLEGHSFYYYGMIMHQMILGDNFKKGDYRITFQGHGLKCDGIWRLWW*

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