Basic Information | |
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Taxon OID | 3300012953 Open in IMG/M |
Scaffold ID | Ga0163179_10027632 Open in IMG/M |
Source Dataset Name | Marine eukaryotic phytoplankton communities from the Atlantic Ocean - Atlantic ANT 2 Metagenome |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 3800 |
Total Scaffold Genes | 12 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 10 (83.33%) |
Novel Protein Genes | 5 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (80.00%) |
Associated Families | 5 |
Taxonomy | |
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All Organisms → Viruses → Predicted Viral | (Source: DeepVirFinder) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Oceanic → Unclassified → Seawater → Marine Eukaryotic Phytoplankton Communities From The Norwegian Sea, Arctic And Atlantic Ocean |
Source Dataset Sampling Location | ||||||||
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Location Name | North Atlantic Ocean | |||||||
Coordinates | Lat. (o) | 34.876 | Long. (o) | -13.1352 | Alt. (m) | Depth (m) | 80 | Location on Map |
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Family | Category | Number of Sequences | 3D Structure? |
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F007343 | Metagenome | 353 | Y |
F019151 | Metagenome | 231 | Y |
F024570 | Metagenome | 205 | Y |
F033836 | Metagenome | 176 | Y |
F066845 | Metagenome | 126 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0163179_100276322 | F007343 | N/A | MTNNNIPTKGNNTMRVSELQPAAYPQSPSVEKPNSDAHALFTNDFNKNSFIEANGDVEIVWNERYNYWEVPAFAESRAAYGEAKQRFCDQHGSE* |
Ga0163179_100276324 | F033836 | GGA | MGNSMSISEYEFFGVSNNAYAKNTHSTISKGISGMAEKNKATTATQEKRFASMAKETEVKAATFCVLAFVLGLCCALMLGCKTSAKVEGGAEIIELKPLKMQELTYPVHDYSKICADCGFSEWTDSWCEAHMGETAFCSASK* |
Ga0163179_100276326 | F066845 | AGGAG | MMNNRKKAIAMHNAGKKRFADIFTGCLAHGTLKQTQKKKKTFKLKKG* |
Ga0163179_100276327 | F024570 | AGGA | MAYVAYEIRQTKETATGTRHLVRCNRLGKYAICSWVGSTGSVMGNPECQGNYDYVMKKWKKIQRKRQPVT* |
Ga0163179_100276329 | F019151 | AGGA | MIVANERANKSLEVFNLDGAQAFEMKNETLKMCADDDGTLWRSVRGLEVKDADGNTVFSLSWSETGVCGTVHDDDFLVEITEEF* |
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