NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0163179_10122005

Scaffold Ga0163179_10122005


Overview

Basic Information
Taxon OID3300012953 Open in IMG/M
Scaffold IDGa0163179_10122005 Open in IMG/M
Source Dataset NameMarine eukaryotic phytoplankton communities from the Atlantic Ocean - Atlantic ANT 2 Metagenome
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1913
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (77.78%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Seawater → Marine Eukaryotic Phytoplankton Communities From The Norwegian Sea, Arctic And Atlantic Ocean

Source Dataset Sampling Location
Location NameNorth Atlantic Ocean
CoordinatesLat. (o)34.876Long. (o)-13.1352Alt. (m)Depth (m)80
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000302Metagenome / Metatranscriptome1337Y
F000896Metagenome / Metatranscriptome845Y
F023710Metagenome / Metatranscriptome209Y
F037814Metagenome / Metatranscriptome167N

Sequences

Protein IDFamilyRBSSequence
Ga0163179_101220052F000896GGAGGMTNKINLVINLSILALLIYLSVAVKQLQDKVFPDPNIMIPLMGQMDSKSELEYNIRTLLNNALEMAIQEQENN*
Ga0163179_101220054F000302GGAGGMVKTMTQDTKERIRDLEGQKLILEDRLEFLGYSGNLVKMHKIEEEIFEIEDTIAKLTA*
Ga0163179_101220055F023710N/AMQKTIEKKLESFVRAELSGIVQRVEMVNGSMFLMLDKPGQCDFVHKELRTFYKENINPEGGVNMYFVGDEFAFDFVPADAETPVFTNEDEVESNVDVALNLEEEIKRGK*
Ga0163179_101220056F037814AGGGGGMEISLGISIFMLLVILVSFTYMLKELKECQKIIKKMQRRSRKYIREVVSND*
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