NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0163179_10126102

Scaffold Ga0163179_10126102


Overview

Basic Information
Taxon OID3300012953 Open in IMG/M
Scaffold IDGa0163179_10126102 Open in IMG/M
Source Dataset NameMarine eukaryotic phytoplankton communities from the Atlantic Ocean - Atlantic ANT 2 Metagenome
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1884
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Seawater → Marine Eukaryotic Phytoplankton Communities From The Norwegian Sea, Arctic And Atlantic Ocean

Source Dataset Sampling Location
Location NameNorth Atlantic Ocean
CoordinatesLat. (o)34.876Long. (o)-13.1352Alt. (m)Depth (m)80
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003693Metagenome / Metatranscriptome473Y
F018479Metagenome / Metatranscriptome235Y
F018550Metagenome / Metatranscriptome234Y

Sequences

Protein IDFamilyRBSSequence
Ga0163179_101261021F018550N/ATGSSQVISFKTISEALKRMYDNHAPMTNPVLAVSPKQLLDLNNELVKGTVDIAGTIIPRDRNVAGLDIDTIITPFGSLGLMVIDPDVMPTGTAFILDLAYIQPVFTNIPGFGTVFVRDLDQDANARIGKAIYMEMGFEFGPPSYHCKIQAVA*
Ga0163179_101261022F003693AGGMISKTALIDISADNNNSLGVEAEGMLLCGIQFPAAMTGTAITFDFALDNSTWADVKETDGSAVSYTVSAGDVVRVDPSGWGFASNGYIRLTSNGTEAADRAIILHFRHS*
Ga0163179_101261024F018479AGAAGGMSTDIAGLVDRVYREYLEPMDDLTSYTTLSTEVNTSATSIVFDGDLLTQEEEDAMDAGTIIECEQELMRCTSLDTVNNTVTVVRGVLGTTAAEHVVGKVIKIAPVFPRKNVFDTVCDQIKNLYPTLFATETKQITAKTGYIPLSGTNDNYLITPIKAVSQYTDFSAGSDETGIVYTGVAVELVDLPNPFTYTDSDGVSQTITYSNNGPNKVNAVQVYNVNSGHTVFITFKKKFIEPTSESDTLATVGLENEYEPIIMAGVAAQMMAGRDIPTSTADYI
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