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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300012954 Open in IMG/M |
| Scaffold ID | Ga0163111_10004264 Open in IMG/M |
| Source Dataset Name | Marine microbial communities from the Costa Rica Dome - CRUD Field 142mm St18 metaG |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 9306 |
| Total Scaffold Genes | 15 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 14 (93.33%) |
| Novel Protein Genes | 3 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (100.00%) |
| Associated Families | 3 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → Proteobacteria | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Oceanic → Photic Zone → Surface Seawater → Marine Microbial Communities From The Costa Rica Dome And Surrounding Waters |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Costa Rica: the Eastern Pacific | |||||||
| Coordinates | Lat. (o) | 0.8736 | Long. (o) | -97.0511 | Alt. (m) | Depth (m) | 5 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F037431 | Metagenome / Metatranscriptome | 168 | Y |
| F042637 | Metagenome / Metatranscriptome | 158 | Y |
| F067686 | Metagenome / Metatranscriptome | 125 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0163111_100042641 | F042637 | AGGA | MAIFSGKIIEAYFANSENNTVEIIYEDGKRAINHYLPVDYNNPDFKDLIAEYSTDKIAEATIARNRRYAQQLSDIVDAGIKAKTDIKQRVSVEDFVKSILYFDPNDPQCKEMLFTTKVEIFETEKVKESTDKVRKSKLRSAKTPLELLVTYNEFND* |
| Ga0163111_1000426413 | F067686 | GAGG | MPSDLSHYELPEFLDSDTKSRLLQIGLSLKDDDWTVHKSTRTGKPSVLNFYDLNMTFHGRNCYLLMIRPQAIQDWHTDGGKRNTALIYPLSENYAPCSFEQGQTDRPMFLNTQSKHAVFNNDEKRINLNISFEEDIDDCIEFFKCLKFFKGNTAYEFDPS* |
| Ga0163111_1000426415 | F037431 | GAGG | MKFKTDRPFTQDELKAMDVIHDPATSLFQDQNDKSYILPNFINDDECDFLAKFFNDNFDRIGLNINDHVLHITYPMAIKDIDDIVRPKIYEHFGDDVIFYSDVAVDDPMSVGDQFFKSVRPYGLHTDSVTHINGYRPYKDIIIPIELDKIVSTQYVTFNQRYRGRATHFMKGRDIGSFANYANVIRHQDYKDYGVENVESNTRDMEILGKIMPKHIPMSIYEGLSIENIFEWKPKNAIVHDASVLHAPTDFREHGAKYKTGLTLHLMKADATYN |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |