NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0163111_10081251

Scaffold Ga0163111_10081251


Overview

Basic Information
Taxon OID3300012954 Open in IMG/M
Scaffold IDGa0163111_10081251 Open in IMG/M
Source Dataset NameMarine microbial communities from the Costa Rica Dome - CRUD Field 142mm St18 metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2611
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (20.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Photic Zone → Surface Seawater → Marine Microbial Communities From The Costa Rica Dome And Surrounding Waters

Source Dataset Sampling Location
Location NameCosta Rica: the Eastern Pacific
CoordinatesLat. (o)0.8736Long. (o)-97.0511Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002412Metagenome / Metatranscriptome561Y
F064453Metagenome / Metatranscriptome128Y

Sequences

Protein IDFamilyRBSSequence
Ga0163111_100812511F002412N/AMFLRVLFIYIVLTFSTTAFHLNTFAVFELQEELQMRYMNMWELLHQLEYVTPDQRAVVYEEIEHLKQEINSIIDQLIQHDQSQHP*
Ga0163111_100812513F064453AGGMIYTDEENKWLSTPKKYKKSNTNKQRKVEETEWDCKGGHWFVNPTRAWGIKTTIEVDGKEYVVPVQL*

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