NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0163111_10084662

Scaffold Ga0163111_10084662


Overview

Basic Information
Taxon OID3300012954 Open in IMG/M
Scaffold IDGa0163111_10084662 Open in IMG/M
Source Dataset NameMarine microbial communities from the Costa Rica Dome - CRUD Field 142mm St18 metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2564
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (71.43%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Photic Zone → Surface Seawater → Marine Microbial Communities From The Costa Rica Dome And Surrounding Waters

Source Dataset Sampling Location
Location NameCosta Rica: the Eastern Pacific
CoordinatesLat. (o)0.8736Long. (o)-97.0511Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000681Metagenome / Metatranscriptome939Y
F000724Metagenome / Metatranscriptome919Y
F012681Metagenome / Metatranscriptome278Y

Sequences

Protein IDFamilyRBSSequence
Ga0163111_100846621F012681N/AMYIEELDKDGKPLEDENGGFVQDIQHDFEDLESLGALIKCTEEHNTGSKSCENEYYVFGQYFNKGGWHTPDIIKTGPDGIEIDKLTIEMVNADGFKVFNEIEYDGEVYYLEEDSTGKSSSFYVAKGDNLE*
Ga0163111_100846622F000681N/AMNKGVENMYKRCEHYYSVISTEDLYKELNENYTGETDLVQSLMSRAISNGWVETRHELGVANEELWSLNDWPEGEGFGSSDHYEYDRRIQASIAFERKFIQAETELVTINRLTECPKNDTVRKYMKMNDKLAEGMVA*
Ga0163111_100846626F000724AGGAGGMPKKEKVWTMGTSGPLGPWVWHVWVKGKKKPERMVAFDHQHIKDQLEGKQMIKAVKQPEEKDEFSMMPLGPKGSTVNRPADYDAGFKILRAWIDQHGGPPEEIRVKLRELYIDYDKAPKKTTIYSARKKRRY*
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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