NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0154020_10216275

Scaffold Ga0154020_10216275


Overview

Basic Information
Taxon OID3300012956 Open in IMG/M
Scaffold IDGa0154020_10216275 Open in IMG/M
Source Dataset NameActive sludge microbial communities from wastewater, Klosterneuburg, Austria - Klosneuvirus_20160825_MG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1752
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Wastewater → Activated Sludge → Unclassified → Unclassified → Active Sludge → Active Sludge And Wastewater Microbial Communities From Klosterneuburg, Austria

Source Dataset Sampling Location
Location NameAustria: Klosterneuburg
CoordinatesLat. (o)48.3Long. (o)16.2Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F016064Metagenome / Metatranscriptome250Y
F016418Metagenome / Metatranscriptome247Y

Sequences

Protein IDFamilyRBSSequence
Ga0154020_102162751F016064N/AIVAYRGYSLQVTFASLQWQVLIGMVVKDRPTLPPGQQLVKGWNEEETLKRAKTRIDLLIESPSLH*
Ga0154020_102162752F016418AGGMSYRGYDLEQKTLMVGWQITITKDGKFVHNGSVTKSLTSAVDEAERYVDGEIAQADIAASAVSAPLEVSIGPVRT*

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