NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0164299_10408187

Scaffold Ga0164299_10408187


Overview

Basic Information
Taxon OID3300012958 Open in IMG/M
Scaffold IDGa0164299_10408187 Open in IMG/M
Source Dataset NameUnamended control soil microbial communities from upstate New York, USA - Whitman soil sample_221_MG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)875
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Amended Soil Microbial Communities From New York, Usa To Study Carbon Cycling

Source Dataset Sampling Location
Location NameUSA: Mt. Pleasant research farm, Cornell University, New York
CoordinatesLat. (o)42.4531Long. (o)-76.3842Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F068193Metagenome125Y

Sequences

Protein IDFamilyRBSSequence
Ga0164299_104081871F068193GGAMSLAPAQDHAEQLQTSVPAGDAIAPSRWRALQLRFRKMPLWTRYGAITLLLIAAIFAVYVAVPAEQAHLQIICQHSFRSAQLSVLVDGSVVYSNNVNVASKKRLGILPRGQSGPEIFSKVIDVPTGKHVVQVRISAPGEEFDQVRSAAADFTSDRESILQINATRRNALTVNFEGASSSTTAPLAASSTSESHPLPKGGITIVFSILGTMLSASISFLVQEFWRSHKNRISS*
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