NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0164302_10003763

Scaffold Ga0164302_10003763


Overview

Basic Information
Taxon OID3300012961 Open in IMG/M
Scaffold IDGa0164302_10003763 Open in IMG/M
Source Dataset NameSoil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_202_MG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5276
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (42.86%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Amended Soil Microbial Communities From New York, Usa To Study Carbon Cycling

Source Dataset Sampling Location
Location NameUSA: Mt. Pleasant research farm, Cornell University, New York
CoordinatesLat. (o)42.4531Long. (o)-76.3842Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F015863Metagenome / Metatranscriptome251Y
F081321Metagenome / Metatranscriptome114N

Sequences

Protein IDFamilyRBSSequence
Ga0164302_100037633F081321N/AMRAVMCTVLRAAALISLALVPVSPTHAACRGNCEPNVEVARGAMQQIFKQTFLSPYTLVSFERLDGRSGERYGGVFYEMRIRAVLHYDGVKLRCRRPACPELHHYLLEDDARSKKATVAGWLFLQQDGEGDWQLVPLTPGPQ*
Ga0164302_100037637F015863N/AMRRFIPLLILLGLVFGASYASALINRVMGPWSSTAIHQDGSLSHMQFGVDLPRPEWVPVYPGAWVVGGSKITSVEHPAGFHGLDLGTRASLDEVKRFYTEQLTAAGFEVSDLGLMGLNPMTAAYLGGHRMLSTKRHATDEAIDVQIRTPDGIIPSRLLQIHGRKISATPG*
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