Scaffold Ga0129337_1333352

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0129337_1333352

Scaffold Ga0129337_1333352

Overview

Basic Information
Taxon OID	3300012968 Open in IMG/M
Scaffold ID	Ga0129337_1333352 Open in IMG/M
Source Dataset Name	Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Sum_0.6_0.2_RNA1 (Metagenome Metatranscriptome)
Source Dataset Category	Metatranscriptome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1734
Total Scaffold Genes	2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Oligotrichia → Strombidiidae → Strombidium → Strombidium inclinatum	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location Name	USA: Chesapeake Bay
Coordinates	Lat. (^o)	39.2637	Long. (^o)	-76.0017	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F000820	Metagenome / Metatranscriptome	878	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0129337_13333522	F000820	GGAG	MFDQNVTRGALKNLVTDKPSPITVKLAQKADGDILSGLFGENVTRGMLKNLVTDKPSPITTKLAQKADGDILSALFGENVTRGMLKNLITDKPSPITTKLAQKADGDILSGLFGENVTRGMLKNLVTDKPSPITTKLAQKADGDILSGLFGENVTRGMLKNLVTDKPSPITTKLAQK

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