NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0126369_10868096

Scaffold Ga0126369_10868096


Overview

Basic Information
Taxon OID3300012971 Open in IMG/M
Scaffold IDGa0126369_10868096 Open in IMG/M
Source Dataset NameTropical forest soil microbial communities from Panama - MetaG Plot_1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)987
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil → Tropical Forest Soil Microbial Communities From Panama Analyzed To Predict Greenhouse Gas Emissions

Source Dataset Sampling Location
Location NamePanama
CoordinatesLat. (o)9.1086Long. (o)-79.8436Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F043098Metagenome / Metatranscriptome157Y
F049101Metagenome / Metatranscriptome147Y

Sequences

Protein IDFamilyRBSSequence
Ga0126369_108680961F043098N/AVTALLLAALALSPALKNLYVTNGSTPFSGDGRLLTTVSPNGDGFRDRAIVHFGLARPARVALDVVATNMVRAGEGGTSVVWHTARFFGVGPGTLTWRPQRSTQPRTSILRLHVGTRVYGAYGPGGRQDAPVVRVQGV
Ga0126369_108680962F049101N/AMRRLLTFAVLVAALAVPAGAGARSFSTSDGTLSVKDARGVITIQGRGAVIGSVGKGSIMINDPVDGDGTGPIVSGDEWSKDKTDTATIWGGTKVRFRIIGGTFRIVVRGRGINLSFVGKANVIVNGAGTDDDGSYAVNGGDYNLIPAFALPFALSATSSP*
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