NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0123350_10038800

Scaffold Ga0123350_10038800


Overview

Basic Information
Taxon OID3300012974 Open in IMG/M
Scaffold IDGa0123350_10038800 Open in IMG/M
Source Dataset NameFecal eukaryotic communites from dung pellets of Tule Elk in California, USA - Elk Dung F16 Day 16 Metagenome
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2797
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (20.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Mammals → Digestive System → Large Intestine → Fecal → Fecal → Fecal Eukaryotic Communites From Dung Pellets Of Tule Elk In California, Usa

Source Dataset Sampling Location
Location NamePoint Reyes National Seashore, California, USA
CoordinatesLat. (o)38.04Long. (o)-122.5Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F057003Metagenome / Metatranscriptome137Y

Sequences

Protein IDFamilyRBSSequence
Ga0123350_100388004F057003N/AMANFIDLTGLTYCGKEAQEIFSKDIYDIDLRQYGITFMDGVKGKMKIYTGEIGDAWQLYTCPFTPAGSASLAEAFIEPAAIKVNQENCYDTFWNTFLVDQTEISLRGGIPQTFGDWYFGKLRQKMAKEYQEIFWQGDTARTATTKVYLKATDGVEKKLSALPSGNKVALSALTVDNVIAQLEAVITKGMDVANAAEVDTEGYKVFMNHADVRVLEVALGKVCCPNSVNQVFANYARENGRIYVMGYEIVPTMQSRNTIIFGPVRNLVLGYDTFDSHIEYKLINMRDTTGDNMFRVLAISNIAVGIIMPELFVYANV*
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